I suppose it might have been Shooter or Machio that named the ship "the Ark". AUNTIE was some piss poor attempt at whimsy. Good riddance to that name.
I know that the Nemesis showed up in the UK comics. Was it named there?
"Nemesis" is not a bad name for warship. At the very least, it is consistent with the conventions of sci-fi. If you read "Nemesis" to mean "scary thing that is going to kill you", it is wholly appropriate for the Decepticons to give that name to their ship.
"Big Name Fans". Raksha seems to qualify. I have never liked the idea of some fans being seen as authority figures within their fandom. Like a snake eating its own tail.
A fan being known is not a problem. Yee or DVD are also big name fans, and they generally avoid self-indulgent wankery. (Even Yee' lackluster showing on BW was less a case of injecting fanon and more a general lack of discipline.) Raksha is less an authority and more a sort of brand. Think of her as a literary theorist.
In the cartoon, the Autobots are in the ship to find a new energy resource and the Decepticons follow them and board the ship. In the comics, the Autobots are in the ship to...clear away meteors that Cybertron is going to hit because Cybertron is hurling through space because the FORCE OF THE WAR caused it to leave orbit. Yes. Anyway, the Decepticons just kind of sneak in while it's still on Cybertron.)
Actually, in the cartoon, the Autobots have to knock out some asteroids as well. But, I am not sure if Cybertron was off its orbit. (Searching for energy makes sense, but was not a given reason until "Beast Wars".) And, in the comic, the Decepticons attack the Ark while it is in space (after the Autobots have destroyed the asteroids). There is no indication that the Decepticons launch the attack from a ship. This actually makes more sense than the cartoon. (Why would the Decepticons risk a boarding action if they have a warship at their disposal?)
Y'know what I love about those few panels? The fact that you can see toy-accurate Ironhide in the background in all his craptastic glory.
Actually, you cannot see the sticker face in that panel.
Dom
-always wondered how Cybertron came off its orbit. I mean, what would it take?